JavaScript Toolbox - Dynamic Option List
cREMaG is a database interface allowing for detection of the over-representation of transcription factor binding sites (TFBS) for a queried set of co-expressed genes. If the genes are co-expressed it is highly probable that they are co-regulated. Analysis of common properties of their promoters could suggest the transcription factors responsible for their corregulation.
Step I - input your genes
Input Your query name

Species

Homo sapiens
Mus musculus
Rattus norvegicus
Canis familiaris
Bos taurus
Input IDs:



Gene symbol

or Ensembl ID

or Entrez ID
Select Alternative Trancription Start Sites (TSS)
All TSSs
Most expressed TSSs
Most Distal TSSs
TSSs with CpG islands longer than 400 bp
TSSs with CpG islands shorter than 400 bp


Service initiated 1 march 2008. Updated 15th November 2010
Supported by LSHM-CT-2004-005166, PBZ-MNiI-2/1/2005 and NN405 274137 grants

Please cite
Identification of cis-regulatory elements in the mammalian genome: the cREMaG database. Piechota M, Korostynski M, Przewlocki R. PLoS One. 2010 Aug 31;5(8):e12465.
within any publication that makes use of any methods inspired by cREMaG.

Maintained by Marcin Piechota, Michal Korostynski (Institute of Pharmacology PAS, Krakow, Smetna 12, Poland)
Correspondence should be adressed to Marcin Piechota, e-mail: marpiech@if-pan.krakow.pl